Girkes, Thomas: search on Z-Library

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1

Orchestrating high-throughput genomic analysis with Bioconductor

Huber, Wolfgang, Carey, Vincent J, Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S, Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, F

Journal:

Year:

2015

Language:

english

File:

PDF, 364 KB

english, 2015

2

Small RNA Profiling Reveals Phosphorus Deficiency as a Contributing Factor in Symptom Expression for Citrus Huanglongbing Disease

Zhao, Hongwei, Sun, Ruobai, Albrecht, Ute, Padmanabhan, Chellappan, Wang, Airong, Coffey, Michael D., Girke, Thomas, Wang, Zonghua, Close, Timothy J., Roose, Mikeal, Yokomi, Raymond K., Folimonova, Sv

Journal:

Molecular Plant

Year:

2013

Language:

english

File:

PDF, 4.06 MB

english, 2013

3

Genetic Support for Longevity-Enhancing Drug Targets: Issues, Preliminary Data, and Future Directions

McCorrison, Jamison, Girke, Thomas, Goetz, Laura H, Miller, Richard A, Schork, Nicholas J, Le Couteur, David

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2019

File:

PDF, 282 KB

2019

4

Identification of a novel D6-acyl-group desaturase by targeted gene disruption in Physcomitrella patens

Thomas Girke, Hermann Schmidt, Ulrich Zähringer, Ralf Reski, Ernst Heinz

Journal:

The Plant Journal

Year:

1998

Language:

english

File:

PDF, 856 KB

english, 1998

5

A bifunctional Δ6-fatty acyl acetylenase/desaturase from the moss Ceratodon purpureus : A new member of the cytochrome b5 superfamily

Petra Sperling, Michael Lee, Thomas Girke, Ulrich Zähringer, Sten Stymne, Ernst Heinz

Journal:

Year:

2000

Language:

english

File:

PDF, 1.25 MB

english, 2000

6

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu

Journal:

BMC Molecular Biology

Year:

2008

Language:

english

File:

PDF, 786 KB

english, 2008

7

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli

Mikkel Girke Jørgensen, Jesper S. Nielsen, Anders Boysen, Thomas Franch, Jakob Møller-Jensen, Poul Valentin-Hansen

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

8

Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana

Riki Kawaguchi, Thomas Girke, Elizabeth A. Bray, Julia Bailey-Serres

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 420 KB

english, 2004

9

Predicting conserved protein motifs with Sub-HMMs

Kevin Horan, Christian R Shelton, Thomas Girke

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 3.96 MB

english, 2010

10

Pulmonary valve replacement in chronic pulmonary regurgitation in adults with congenital heart disease: Impact of preoperative QRS-duration and NT-proBNP levels on postoperative right ventricular function

Mechthild Westhoff-Bleck, Stefan Girke, Thomas Breymann, Joachim Lotz, Stefanie Pertschy, Oktay Tutarel, Philipp Roentgen, Harald Bertram, Armin Wessel, Bernhard Schieffer, Gerd Peter Meyer

Journal:

International Journal of Cardiology

Year:

2011

Language:

english

File:

PDF, 302 KB

english, 2011

11

Distinguishing Humans from Great Apes with AluYb8 Repeats

Rosaleen Gibbons, Lars J. Dugaiczyk, Thomas Girke, Brian Duistermars, Rita Zielinski, Achilles Dugaiczyk

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.24 MB

english, 2004

12

What makes species unique? The contribution of proteins with obscure features

Martin Gollery, Jeff Harper, John Cushman, Taliah Mittler, Thomas Girke…

Journal:

Year:

2006

Language:

english

File:

PDF, 366 KB

english, 2006

13

Functional Genomics from a Plant Biochemist's Perspective

Ohlrogge, John, Ruuska, Sari, Mekhedov, Sergei, Girke, Thomas, Benning, Christoph

Journal:

Acta Agriculturae Scandinavica, Section B - Soil & Plant Science

Year:

2003

Language:

english

File:

PDF, 196 KB

english, 2003

14

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Differential gene expression analysis using coexpression and RNA-Seq data

Ei-Wen Yang,, Girkes, Thomas, Tao Jaing,

Year:

2013

Language:

english

File:

PDF, 70 KB

english, 2013

15

Tomato Susceptibility to Root-Knot Nematodes Requires an Intact Jasmonic Acid Signaling Pathway

Bhattarai, Kishor K., Xie, Qi-Guang, Mantelin, Sophie, Bishnoi, Usha, Girke, Thomas, Navarre, Duroy A., Kaloshian, Isgouhi

Journal:

Molecular Plant-Microbe Interactions

Year:

2008

Language:

english

File:

PDF, 366 KB

english, 2008

16

Pathophysiologic and Transcriptomic Analyses of Viscerotropic Yellow Fever in a Rhesus Macaque Model

Engelmann, Flora, Josset, Laurence, Girke, Thomas, Park, Byung, Barron, Alex, Dewane, Jesse, Hammarlund, Erika, Lewis, Anne, Axthelm, Michael K., Slifka, Mark K., Messaoudi, Ilhem, Geisbert, Thomas

Journal:

PLoS Neglected Tropical Diseases

Year:

2014

Language:

english

File:

PDF, 2.82 MB

english, 2014

17

The Synthetic Elicitor 3,5-Dichloroanthranilic Acid Induces NPR1-Dependent and NPR1-Independent Mechanisms of Disease Resistance in Arabidopsis

Colleen Knoth, Melinda S. Salus, Thomas Girke and Thomas Eulgem

Journal:

PLANT PHYSIOLOGY

Year:

2009

Language:

english

File:

PDF, 3.21 MB

english, 2009

18

Towards a Modeling Infrastructure for Studying Plant Cells

Thomas Girke, Mihri Ozkan, David Carter and Natasha V. Raikhel

Journal:

PLANT PHYSIOLOGY

Year:

2003

Language:

english

File:

PDF, 1.09 MB

english, 2003

19

Arabidopsis Genome: A Milestone in Plant Biology || Microarray Analysis of Developing Arabidopsis Seeds

Thomas Girke, Jim Todd, Sari Ruuska, Joe White, Christoph Benning and John Ohlrogge

Journal:

PLANT PHYSIOLOGY

Year:

2000

Language:

english

File:

PDF, 2.05 MB

english, 2000

20

Arabidopsis Genome: A Milestone in Plant Biology || A New Set of Arabidopsis Expressed Sequence Tags from Developing Seeds. The Metabolic Pathway from Carbohydrates to Seed Oil

Joseph A. White, Jim Todd, Tom Newman, Nicole Focks, Thomas Girke, Oscar Martínez de Ilárduya , Jan G. Jaworski, John B. Ohlrogge and Christoph Benning

Journal:

PLANT PHYSIOLOGY

Year:

2000

Language:

english

File:

PDF, 1.79 MB

english, 2000

21

Hairy and Groucho mediate the action of juvenile hormone receptor Methoprene-tolerant in gene repression

Saha, Tusar T., Shin, Sang Woon, Dou, Wei, Roy, Sourav, Zhao, Bo, Hou, Yuan, Wang, Xue-Li, Zou, Zhen, Girke, Thomas, Raikhel, Alexander S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

22

MODIFIED VACUOLE PHENOTYPE1 Is an Arabidopsis Myrosinase-Associated Protein Involved in Endomembrane Protein Trafficking

April E. Agee, Marci Surpin, Eun Ju Sohn, Thomas Girke, Abel Rosado, Brian W. Kram, Clay Carter, Adam M. Wentzell, Daniel J. Kliebenstein, Hak Chul Jin, Ohkmae K. Park, Hailing Jin, Glenn R. Hicks and

Journal:

PLANT PHYSIOLOGY

Year:

2010

Language:

english

File:

PDF, 2.64 MB

english, 2010

23

Clusters of bioactive compounds target dynamic endomembrane networks in vivo

Georgia Drakakaki, Stéphanie Robert, Anna-Maria Szatmari, Michelle Q. Brown, Shingo Nagawa, Daniel Van Damme, Marilyn Leonard, Zhenbiao Yang, Thomas Girke, Sandra L. Schmid, Eugenia Russinova, Jiří Fr

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

24

Genome Cluster Database. A Sequence Family Analysis Platform for Arabidopsis and Rice

Kevin Horan, Josh Lauricha, Julia Bailey-Serres, Natasha Raikhel and Thomas Girke

Journal:

PLANT PHYSIOLOGY

Year:

2005

Language:

english

File:

PDF, 1.69 MB

english, 2005

25

Arabidopsis Special Issue || Chemmine. A Compound Mining Database for Chemical Genomics

Thomas Girke, Li-Chang Cheng and Natasha Raikhel

Journal:

PLANT PHYSIOLOGY

Year:

2005

Language:

english

File:

PDF, 1.14 MB

english, 2005

26

The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteins

Clay Carter, Songqin Pan, Jan Zouhar, Emily L. Avila, Thomas Girke and Natasha V. Raikhel

Journal:

Year:

2004

Language:

english

File:

PDF, 2.86 MB

english, 2004

27

Cloning and Characterization of MicroRNAs from Rice

Ramanjulu Sunkar, Thomas Girke, Pradeep Kumar Jain and Jian-Kang Zhu

Journal:

Year:

2005

Language:

english

File:

PDF, 1.40 MB

english, 2005

28

Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress

Van Veen, Hans, Vashisht, Divya, Akman, Melis, Girke, Thomas, Mustroph, Angelika, Reinen, Emilie, Hartman, Sjon, Kooiker, Maarten, van Tienderen, Peter, Schranz, M. Eric, Bailey-Serres, Julia, Voesene

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 8.98 MB

english, 2016

29

bioassayR: Cross-Target Analysis of Small Molecule Bioactivity

Backman, Tyler William H., Girke, Thomas

Journal:

Journal of Chemical Information and Modeling

Year:

2016

Language:

english

File:

PDF, 484 KB

english, 2016

30

Contrapuntal Networks of Gene Expression during Arabidopsis Seed Filling

Sari A. Ruuska, Thomas Girke, Christoph Benning and John B. Ohlrogge

Journal:

Year:

2002

Language:

english

File:

PDF, 2.51 MB

english, 2002

31

Acute simian varicella infection causes robust and sustained changes in gene expression in the sensory ganglia

Arnold, Nicole, Girke, Thomas, Sureshchandra, Suhas, Messaoudi, Ilhem

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 2.16 MB

english, 2016

32

In Planta Expression or Delivery of Potato Aphid Macrosiphum euphorbiae Effectors Me10 and Me23 Enhances Aphid Fecundity

Atamian, Hagop S., Chaudhary, Ritu, Cin, Valeriano Dal, Bao, Ergude, Girke, Thomas, Kaloshian, Isgouhi

Journal:

Molecular Plant-Microbe Interactions

Year:

2013

Language:

english

File:

PDF, 566 KB

english, 2013

33

Genomic and functional analysis of the host response to acute simian varicella infection in the lung

Arnold, Nicole, Girke, Thomas, Sureshchandra, Suhas, Nguyen, Christina, Rais, Maham, Messaoudi, Ilhem

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.11 MB

english, 2016

34

Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of Aedes aegypti

Zhang, Xiufeng, Aksoy, Emre, Girke, Thomas, Raikhel, Alexander S., Karginov, Fedor V.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

35

systemPipeR: NGS workflow and report generation environment

Backman, Tyler W. H., Girke, Thomas

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 857 KB

english, 2016

36

Novel Approach for In Vivo Detection of Vulnerable Coronary Plaques using Molecular 3-T CMR Imaging with an Albumin-Binding Probe

Engel, Leif-Christopher, Landmesser, Ulf, Gigengack, Kevin, Wurster, Thomas, Manes, Constantina, Girke, Georg, Jaguszewski, Milosz, Skurk, Carsten, Leistner, David M., Lauten, Alexander, Schuster, And

Journal:

Journal of the American College of Cardiology: Cardiovascular Imaging

Year:

2018

Language:

english

File:

PDF, 1.76 MB

english, 2018

37

Deciphering the Ubiquitin-Mediated Pathway in Apicomplexan Parasites: A Potential Strategy to Interfere with Parasite Virulence

Ponts, Nadia, Yang, Jianfeng, Chung, Duk-Won Doug, Prudhomme, Jacques, Girke, Thomas, Horrocks, Paul, Le Roch, Karine G., Fairhead, Cecile

Journal:

Year:

2008

Language:

english

File:

PDF, 1.39 MB

english, 2008

38

Microarray Analysis of Tomato’s Early and Late Wound Response Reveals New Regulatory Targets for Leucine Aminopeptidase A

Scranton, Melissa A., Fowler, Jonathan H., Girke, Thomas, Walling, Linda L., Brody, James P

Journal:

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

39

Decoding the Ubiquitin-Mediated Pathway of Arthropod Disease Vectors

Choy, Anthony, Severo, Maiara S., Sun, Ruobai, Girke, Thomas, Gillespie, Joseph J., Pedra, Joao H. F., Ganta, Roman

Journal:

Year:

2013

Language:

english

File:

PDF, 1.55 MB

english, 2013

40

Noninvasive Imaging of Endothelial Damage in Patients with different HbA1c-levels, a Proof-of-Concept Study

Engel, Leif-Christopher, Landmesser, Ulf, Goehler, Alexander, Gigengack, Kevin, Wurster, Thomas, Manes, Costantina, Girke, Georg, Jaguszewski, Milosz, Skurk, Carsten, Leistner, David M., Lauten, Alexa

Journal:

Year:

2018

Language:

english

File:

PDF, 1.12 MB

english, 2018

41

Experimental Acute Exposure to Thirdhand Smoke and Changes in the Human Nasal Epithelial Transcriptome

Pozuelos, Giovanna L., Kagda, Meenakshi S., Schick, Suzaynn, Girke, Thomas, Volz, David C., Talbot, Prue

Journal:

JAMA Network Open

Year:

2019

Language:

english

File:

PDF, 1.04 MB

english, 2019

42

Genetic Support for Longevity-Enhancing Drug Targets: Issues, Preliminary Data, and Future Directions

McCorrison, Jamison, Girke, Thomas, Goetz, Laura H, Miller, Richard A, Schork, Nicholas J, Le Couteur, David

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2019

Language:

english

File:

PDF, 282 KB

english, 2019

43

HOTAIRM1 lncRNA is downregulated in clear cell renal cell carcinoma and inhibits the hypoxia pathway

Hamilton, Michael J., Young, Matthew, Jang, Kay, Sauer, Silvia, Neang, Vanessa E., King, Alexia T., Girke, Thomas, Martinez, Ernest

Journal:

Year:

2020

File:

PDF, 1.69 MB

2020

44

GENETIC SUPPORT FOR INTERVENTIONS THOUGHT TO PROMOTE HEALTHY AGING

Schork, Nicholas J, Miller, Richard, Girke, Thomas

Journal:

Innovation in Aging

Year:

2019

File:

PDF, 86 KB

2019

45

signatureSearch: environment for gene expression signature searching and functional interpretation

Duan, Yuzhu, Evans, Daniel S, Miller, Richard A, Schork, Nicholas J, Cummings, StevenÂ R, Girke, Thomas

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.41 MB

2020